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WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
15 years 4 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas
MOBIHOC
2006
ACM
15 years 9 months ago
Distributed localization using noisy distance and angle information
Localization is an important and extensively studied problem in ad-hoc wireless sensor networks. Given the connectivity graph of the sensor nodes, along with additional local info...
Amitabh Basu, Jie Gao, Joseph S. B. Mitchell, Giri...
IPPS
1999
IEEE
15 years 1 months ago
A Graph Based Framework to Detect Optimal Memory Layouts for Improving Data Locality
In order to extract high levels of performance from modern parallel architectures, the effective management of deep memory hierarchies is very important. While architectural advan...
Mahmut T. Kandemir, Alok N. Choudhary, J. Ramanuja...
CSB
2003
IEEE
15 years 2 months ago
A New Approach for Gene Annotation Using Unambiguous Sequence Joining
The problem addressed by this paper is accurate and automatic gene annotation following precise identification/annotation of exon and intron boundaries of biologically verified ...
Alexandre Tchourbanov, Daniel Quest, Hesham H. Ali...
LCPC
2004
Springer
15 years 2 months ago
Phase-Based Miss Rate Prediction Across Program Inputs
Previous work shows the possibility of predicting the cache miss rate (CMR) for all inputs of a program. However, most optimization techniques need to know more than the miss rate ...
Xipeng Shen, Yutao Zhong, Chen Ding