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» Accurate multiple sequence-structure alignment of RNA sequen...
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34
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BMCBI
2007
66views more  BMCBI 2007»
15 years 18 days ago
Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
Markus Bauer, Gunnar W. Klau, Knut Reinert
85
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RECOMB
1998
Springer
15 years 4 months ago
A polyhedral approach to RNA sequence structure alignment
Ribonucleic acid (RNA) is a polymer composed of four bases denoted A, C, G, and U. It is a generally single-stranded molecule where the bases form hydrogen bonds within the same m...
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
116
Voted
BMCBI
2010
104views more  BMCBI 2010»
15 years 22 days ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
108
Voted
COMPLIFE
2005
Springer
15 years 6 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
BMCBI
2006
139views more  BMCBI 2006»
15 years 19 days ago
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
Background: Multiple sequence alignment (MSA) is a useful tool in bioinformatics. Although many MSA algorithms have been developed, there is still room for improvement in accuracy...
Shinsuke Yamada, Osamu Gotoh, Hayato Yamana