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BMCBI
2005
178views more  BMCBI 2005»
15 years 3 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
JCB
2007
146views more  JCB 2007»
15 years 3 months ago
MSOAR: A High-Throughput Ortholog Assignment System Based on Genome Rearrangement
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving variou...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
BMCBI
2005
114views more  BMCBI 2005»
15 years 3 months ago
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
Background: Structure prediction of membrane proteins is still a challenging computational problem. Hidden Markov models (HMM) have been successfully applied to the problem of pre...
Piero Fariselli, Pier Luigi Martelli, Rita Casadio
106
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JCC
2007
79views more  JCC 2007»
15 years 3 months ago
Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations
Abstract: A hybrid quantum mechanical/molecular mechanical (QM/MM) potential energy function with HartreeFock, density functional theory (DFT), and post-HF (RIMP2, MP2, CCSD) capab...
H. Lee Woodcock III, Milan Hodoscek, Andrew T. B. ...
156
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TMC
2008
112views more  TMC 2008»
15 years 3 months ago
Throughput Analysis and Measurements in IEEE 802.11 WLANs with TCP and UDP Traffic Flows
There is a vast literature on the throughput analysis of the IEEE 802.11 media access control (MAC) protocol. However, very little has been done on investigating the interplay betw...
Raffaele Bruno, Marco Conti, Enrico Gregori
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