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ANLP
1992
68views more  ANLP 1992»
15 years 3 months ago
Evaluating Parsing Strategies Using Standardized Parse Files
The availability of large files of manuallyreviewed parse trees from the University of Pennsylvania "tree bank", along with a program for comparing system-generated pars...
Ralph Grishman, Catherine Macleod, John Sterling
BMCBI
2010
208views more  BMCBI 2010»
15 years 2 months ago
Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene
Background: Image analysis is an essential component in many biological experiments that study gene expression, cell cycle progression, and protein localization. A protocol for tr...
Zafer Aydin, John I. Murray, Robert H. Waterston, ...
BMCBI
2010
117views more  BMCBI 2010»
15 years 2 months ago
Better score function for peptide identification with ETD MS/MS spectra
Background: Tandem mass spectrometry (MS/MS) has become the primary way for protein identification in proteomics. A good score function for measuring the match quality between a p...
Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma
BMCBI
2008
133views more  BMCBI 2008»
15 years 2 months ago
MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening
Background: The number of protein targets with a known or predicted tri-dimensional structure and of drug-like chemical compounds is growing rapidly and so is the need for new the...
Nicolas Sauton, David Lagorce, Bruno O. Villoutrei...
BMCBI
2007
181views more  BMCBI 2007»
15 years 2 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller