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ALGORITHMICA
2005
195views more  ALGORITHMICA 2005»
14 years 9 months ago
Bit-Parallel Witnesses and Their Applications to Approximate String Matching
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...
Heikki Hyyrö, Gonzalo Navarro
BMCBI
2005
163views more  BMCBI 2005»
14 years 9 months ago
Alkahest NuclearBLAST: a user-friendly BLAST management and analysis system
Background -: Sequencing of EST and BAC end datasets is no longer limited to large research groups. Drops in per-base pricing have made high throughput sequencing accessible to in...
Stephen E. Diener, Thomas D. Houfek, Sam E. Kalat,...
BMCBI
2005
113views more  BMCBI 2005»
14 years 9 months ago
Pathway level analysis of gene expression using singular value decomposition
Background: A promising direction in the analysis of gene expression focuses on the changes in expression of specific predefined sets of genes that are known in advance to be rela...
John K. Tomfohr, Jun Lu, Thomas B. Kepler
TPDS
2008
196views more  TPDS 2008»
14 years 9 months ago
End-to-End Energy Management in Networked Real-Time Embedded Systems
Recent technological advances have opened up a wide range of distributed real-time applications involving battery-driven embedded devices with local processing and wireless communi...
G. Sudha Anil Kumar, Govindarasu Manimaran, Zhengd...
ALIFE
2004
14 years 9 months ago
Basic Autonomy as a Fundamental Step in the Synthesis of Life
In the search for the primary roots of autonomy (a pivotal concept in Varela's comprehensive understanding of living beings), the theory of autopoiesis provided an explicit cr...
Kepa Ruiz-Mirazo, Alvaro Moreno