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WCE
2007
15 years 4 months ago
Sparse Matrix Multiplication Using UPC
—Partitioned global address space (PGAS) languages, such as Unified Parallel C (UPC) have the promise of being productive. Due to the shared address space view that they provide,...
Hoda El-Sayed, Eric Wright
BMCBI
2010
97views more  BMCBI 2010»
15 years 3 months ago
Dual-functioning transcription factors in the developmental gene network of Drosophila melanogaster
Background: Quantitative models for transcriptional regulation have shown great promise for advancing our understanding of the biological mechanisms underlying gene regulation. Ho...
Denis C. Bauer, Fabian A. Buske, Timothy L. Bailey
BMCBI
2008
89views more  BMCBI 2008»
15 years 3 months ago
Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy
Background: Simulating the major molecular events inside an Escherichia coli cell can lead to a very large number of reactions that compose its overall behaviour. Not only should ...
Marco A. J. Iafolla, Guang Qiang Dong, David R. Mc...
BMCBI
2006
133views more  BMCBI 2006»
15 years 3 months ago
Choosing negative examples for the prediction of protein-protein interactions
The protein-protein interaction networks of even well-studied model organisms are sketchy at best, highlighting the continued need for computational methods to help direct experim...
Asa Ben-Hur, William Stafford Noble
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CGF
2006
100views more  CGF 2006»
15 years 3 months ago
Ray Tracing Animated Scenes using Motion Decomposition
Though ray tracing has recently become interactive, its high precomputation time for building spatial indices usually limits its applications to walkthroughs of static scenes. Thi...
Johannes Günther, Heiko Friedrich, Ingo Wald,...