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ALMOB
2007
151views more  ALMOB 2007»
14 years 11 months ago
Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Background: The optimal score for ungapped local alignments of infinitely long random sequences is known to follow a Gumbel extreme value distribution. Less is known about the imp...
Stefan Wolfsheimer, Bernd Burghardt, Alexander K. ...
ANOR
2008
69views more  ANOR 2008»
14 years 11 months ago
Scheduling vessels and container-yard operations with conflicting objectives
Abstract We consider the problem of coordinating the operations of two supply chain partners: a foreign shipping company and a domestic port. The two partners have conflicting busi...
Endre Boros, Lei Lei, Yao Zhao, Hua Zhong
BMCBI
2010
175views more  BMCBI 2010»
14 years 11 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng
BMCBI
2010
103views more  BMCBI 2010»
14 years 11 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
BMCBI
2010
108views more  BMCBI 2010»
14 years 11 months ago
Predicting changes in protein thermostability brought about by single- or multi-site mutations
Background: An important aspect of protein design is the ability to predict changes in protein thermostability arising from single- or multi-site mutations. Protein thermostabilit...
Jian Tian, Ningfeng Wu, Xiaoyu Chu, Yunliu Fan