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NAR
2010
148views more  NAR 2010»
14 years 4 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...
TKDE
2012
245views Formal Methods» more  TKDE 2012»
12 years 12 months ago
Semi-Supervised Maximum Margin Clustering with Pairwise Constraints
—The pairwise constraints specifying whether a pair of samples should be grouped together or not have been successfully incorporated into the conventional clustering methods such...
Hong Zeng, Yiu-ming Cheung
BIODATAMINING
2008
135views more  BIODATAMINING 2008»
14 years 9 months ago
Fast Gene Ontology based clustering for microarray experiments
Background: Analysis of a microarray experiment often results in a list of hundreds of diseaseassociated genes. In order to suggest common biological processes and functions for t...
Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 7 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
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CCGRID
2007
IEEE
15 years 3 months ago
Parameter Sweeps for Functional MRI Research in the "Virtual Laboratory for e-Science" Project
Image analysis is an important component of neuroscience research. The ICT infrastructure and technical knowledge needed to perform (large scale) neuroimaging studies, however, is...
Sílvia Delgado Olabarriaga, Aart J. Nederve...