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POPL
2003
ACM
16 years 1 months ago
Interprocedural compatibility analysis for static object preallocation
We present an interprocedural and compositional algorithm for finding pairs of compatible allocation sites, which have the property that no object allocated at one site is live at...
Ovidiu Gheorghioiu, Alexandru Salcianu, Martin C. ...
RECOMB
2008
Springer
16 years 1 months ago
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins
Abstract. In engineering protein variants by constructing and screening combinatorial libraries of chimeric proteins, two complementary and competing goals are desired: the new pro...
Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg
RECOMB
2006
Springer
16 years 1 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2002
Springer
16 years 1 months ago
Monotony of surprise and large-scale quest for unusual words
The problem of characterizing and detecting recurrent sequence patterns such as substrings or motifs and related associations or rules is variously pursued in order to compress da...
Alberto Apostolico, Mary Ellen Bock, Stefano Lonar...
CADE
2007
Springer
16 years 1 months ago
Solving Quantified Verification Conditions Using Satisfiability Modulo Theories
Abstract. First order logic provides a convenient formalism for describing a wide variety of verification conditions. Two main approaches to checking such conditions are pure first...
Yeting Ge, Clark Barrett, Cesare Tinelli