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» Affine Grassmann codes
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CASES
2003
ACM
15 years 5 months ago
Exploiting bank locality in multi-bank memories
Bank locality can be defined as localizing the number of load/store accesses to a small set of memory banks at a given time. An optimizing compiler can modify a given input code t...
Guilin Chen, Mahmut T. Kandemir, Hendra Saputra, M...
BMCBI
2007
265views more  BMCBI 2007»
14 years 12 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
BMCBI
2005
122views more  BMCBI 2005»
14 years 11 months ago
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...
Jiajian Liu, Gary D. Stormo