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» Agent-based protein structure prediction
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NAR
2007
153views more  NAR 2007»
14 years 11 months ago
PROMALS web server for accurate multiple protein sequence alignments
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grish...
BMCBI
2004
73views more  BMCBI 2004»
14 years 11 months ago
Use of a structural alphabet for analysis of short loops connecting repetitive structures
Background: Because loops connect regular secondary structures, analysis of the former depends directly on the definition of the latter. The numerous assignment methods, however, ...
Laurent Fourrier, Cristina Benros, Alexandre G. de...
BMCBI
2008
124views more  BMCBI 2008»
14 years 12 months ago
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
Background: Non-homology based methods such as phylogenetic profiles are effective for predicting functional relationships between proteins with no considerable sequence or struct...
Ryosuke Watanabe, Enrique Morett, Edgar E. Vallejo
SDM
2010
SIAM
192views Data Mining» more  SDM 2010»
15 years 1 months ago
Fast and Accurate Gene Prediction by Decision Tree Classification
Gene prediction is one of the most challenging tasks in genome analysis, for which many tools have been developed and are still evolving. In this paper, we present a novel gene pr...
Rong She, Jeffrey Shih-Chieh Chu, Ke Wang, Nanshen...
ISMB
1997
15 years 1 months ago
Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors
This workdemonstrates newtechniques developed for the prediction of protein folding class in the context of the most comprehensiveStructural Classification of Proteins (SCOP). The...
Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim