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» Agent-based protein structure prediction
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CSB
2005
IEEE
117views Bioinformatics» more  CSB 2005»
15 years 5 months ago
Protein Structure Prediction Using Physical-Based Global Optimization and Knowledge-Guided Fragment Packing
We describe a new method to predict the tertiary structure of new-fold proteins. Our two-phase approach combines the knowledge-based fragmentpacking with the minimization of a phy...
Jinhui Ding, Elizabeth Eskow, Nelson L. Max, Silvi...
86
Voted
PPDP
2005
Springer
15 years 5 months ago
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...
Alessandro Dal Palù, Agostino Dovier, Enric...
BMCBI
2008
138views more  BMCBI 2008»
14 years 11 months ago
Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction
Background: We present a novel method of protein fold decoy discrimination using machine learning, more specifically using neural networks. Here, decoy discrimination is represent...
Ching-Wai Tan, David T. Jones
CCE
2008
14 years 11 months ago
Prediction of secondary structures of proteins using a two-stage method
Protein structure determination and prediction has been a focal research subject in life sciences due to the importance of protein structure in understanding the biological and ch...
Fadime Üney Yüksektepe, Özlem Yilma...
78
Voted
IPPS
2006
IEEE
15 years 5 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...