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82
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BMCBI
2010
156views more  BMCBI 2010»
15 years 28 days ago
Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes
Background: An adaptive coarse-grained (kinetic) Monte Carlo (ACGMC) simulation framework is applied to reaction and diffusion dynamics in inhomogeneous domains. The presented mod...
Stuart Collins, Michail Stamatakis, Dionisios G. V...
128
Voted
BMCBI
2010
156views more  BMCBI 2010»
15 years 28 days ago
Extended morphological processing: a practical method for automatic spot detection of biological markers from microscopic images
Background: A reliable extraction technique for resolving multiple spots in light or electron microscopic images is essential in investigations of the spatial distribution and dyn...
Yoshitaka Kimori, Norio Baba, Nobuhiro Morone
98
Voted
BMCBI
2008
124views more  BMCBI 2008»
15 years 28 days ago
A relation based measure of semantic similarity for Gene Ontology annotations
Background: Various measures of semantic similarity of terms in bio-ontologies such as the Gene Ontology (GO) have been used to compare gene products. Such measures of similarity ...
Brendan Sheehan, Aaron J. Quigley, Benoit Gaudin, ...
123
Voted
CORR
2010
Springer
160views Education» more  CORR 2010»
15 years 28 days ago
Scalable Probabilistic Databases with Factor Graphs and MCMC
Incorporating probabilities into the semantics of incomplete databases has posed many challenges, forcing systems to sacrifice modeling power, scalability, or treatment of relatio...
Michael L. Wick, Andrew McCallum, Gerome Miklau
CORR
2008
Springer
92views Education» more  CORR 2008»
15 years 27 days ago
Accelerating Large-scale Data Exploration through Data Diffusion
Data-intensive applications often require exploratory analysis of large datasets. If analysis is performed on distributed resources, data locality can be crucial to high throughpu...
Ioan Raicu, Yong Zhao, Ian T. Foster, Alexander S....