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BMCBI
2011
14 years 8 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
JACM
2000
86views more  JACM 2000»
15 years 4 months ago
Periodification scheme: constructing sorting networks with constant period
We consider comparator networks M that are used repeatedly: while the output produced by M is not sorted, it is fed again into M. Sorting algorithms working in this way are called ...
Miroslaw Kutylowski, Krzysztof Lorys, Brigitte Oes...
ICS
2003
Tsinghua U.
15 years 10 months ago
Estimating cache misses and locality using stack distances
Cache behavior modeling is an important part of modern optimizing compilers. In this paper we present a method to estimate the number of cache misses, at compile time, using a mac...
Calin Cascaval, David A. Padua
CIDR
2009
167views Algorithms» more  CIDR 2009»
15 years 6 months ago
Unbundling Transaction Services in the Cloud
The traditional architecture for a DBMS engine has the recovery, concurrency control and access method code tightly bound together in a storage engine for records. We propose a di...
David B. Lomet, Alan Fekete, Gerhard Weikum, Micha...
SIGIR
2011
ACM
14 years 7 months ago
Learning search tasks in queries and web pages via graph regularization
As the Internet grows explosively, search engines play a more and more important role for users in effectively accessing online information. Recently, it has been recognized that ...
Ming Ji, Jun Yan, Siyu Gu, Jiawei Han, Xiaofei He,...
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