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» Algorithm Engineering for Parallel Computation
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ISMB
1994
15 years 8 months ago
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
We describe and demonstrate the effectiveness of a method of predicting protein secondary structures, sheet regions in particular, using a class of stochastic tree grammars as rep...
Hiroshi Mamitsuka, Naoki Abe
ASPLOS
2010
ACM
15 years 5 months ago
Best-effort semantic document search on GPUs
Semantic indexing is a popular technique used to access and organize large amounts of unstructured text data. We describe an optimized implementation of semantic indexing and docu...
Surendra Byna, Jiayuan Meng, Anand Raghunathan, Sr...
IPPS
2010
IEEE
15 years 4 months ago
A distributed diffusive heuristic for clustering a virtual P2P supercomputer
Abstract--For the management of a virtual P2P supercomputer one is interested in subgroups of processors that can communicate with each other efficiently. The task of finding these...
Joachim Gehweiler, Henning Meyerhenke
SPAA
2009
ACM
16 years 7 months ago
Scalable reader-writer locks
We present three new reader-writer lock algorithms that scale under high read-only contention. Many previous reader-writer locks suffer significant degradation when many readers a...
Yossi Lev, Victor Luchangco, Marek Olszewski
IPPS
2003
IEEE
15 years 12 months ago
The Case for Fair Multiprocessor Scheduling
Partitioning and global scheduling are two approaches for scheduling real-time tasks on multiprocessors. Though partitioning is sub-optimal, it has traditionally been preferred; t...
Anand Srinivasan, Philip Holman, James H. Anderson...