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124
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BMCBI
2007
139views more  BMCBI 2007»
15 years 2 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
POPL
2010
ACM
15 years 11 months ago
Semantics and Algorithms for Data-dependent Grammars
Traditional parser generation technologies are incapable of handling the demands of modern programmers. In this paper, we present the design and theory of a new parsing engine, YA...
Yitzhak Mandelbaum, Trevor Jim, David Walker
131
Voted
IPPS
2006
IEEE
15 years 8 months ago
Parallel genetic algorithm for SPICE model parameter extraction
Models of simulation program with integrated circuit emphasis (SPICE) are currently playing a central role in the connection between circuit design and chip fabrication communitie...
Yiming Li, Yen-Yu Cho
121
Voted
SIGCOMM
2004
ACM
15 years 7 months ago
Locating internet bottlenecks: algorithms, measurements, and implications
The ability to locate network bottlenecks along end-to-end paths on the Internet is of great interest to both network operators and researchers. For example, knowing where bottlen...
Ningning Hu, Erran L. Li, Zhuoqing Morley Mao, Pet...
BMCBI
2008
130views more  BMCBI 2008»
15 years 2 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen