This paper describes a new method of executing a software program on an FPGA for embedded systems. Rather than combine reconfigurable logic with a microprocessor core, this method...
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Stochastic simulations and other scientific applications that depend on random numbers are increasingly implemented in a parallelized manner in programmable logic. High-quality ps...
Local search methods such as WSAT have proven to be successful for solving SAT problems. In this paper, we propose two host-FPGA (Field Programmable Gate Array) co-implementations,...