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» Algorithmic Analysis of Array-Accessing Programs
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89
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BMCBI
2007
130views more  BMCBI 2007»
15 years 17 days ago
Differential analysis for high density tiling microarray data
Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
107
Voted
BMCBI
2006
100views more  BMCBI 2006»
15 years 19 days ago
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions
Background: Many genome projects are left unfinished due to complex, repeated regions. Finishing is the most time consuming step in sequencing and current finishing tools are not ...
Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen K...
115
Voted
BMCBI
2005
152views more  BMCBI 2005»
15 years 14 days ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
FMICS
2007
Springer
15 years 6 months ago
An Approach to Formalization and Analysis of Message Passing Libraries
Message passing using libraries implementing the Message Passing Interface (MPI) standard is the dominant communication mechanism in high performance computing (HPC) applications. ...
Robert Palmer, Michael Delisi, Ganesh Gopalakrishn...
PASTE
2004
ACM
15 years 6 months ago
Resolving and applying constraint queries on context-sensitive analyses
A context-sensitive analysis is an analysis in which program elements are assigned sets of properties that depend upon the context in which they occur. For analyses on imperative ...
James Ezick