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» Algorithmic Analysis of Array-Accessing Programs
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CGO
2007
IEEE
15 years 7 months ago
Run-Time Support for Optimizations Based on Escape Analysis
The JavaTM programming language does not allow the programmer to influence memory management. An object is usually allocated on the heap and deallocated by the garbage collector ...
Thomas Kotzmann, Hanspeter Mössenböck
123
Voted
BMCBI
2008
89views more  BMCBI 2008»
15 years 22 days ago
R/parallel - speeding up bioinformatics analysis with R
Background: R is the preferred tool for statistical analysis of many bioinformaticians due in part to the increasing number of freely available analytical methods. Such methods ca...
Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
90
Voted
CAV
2008
Springer
122views Hardware» more  CAV 2008»
15 years 2 months ago
Thread Quantification for Concurrent Shape Analysis
In this paper we address the problem of shape analysis for concurrent programs. We present new algorithms, based on abstract interpretation, for automatically verifying properties ...
Josh Berdine, Tal Lev-Ami, Roman Manevich, G. Rama...
BMCBI
2005
125views more  BMCBI 2005»
15 years 15 days ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
RECOMB
2003
Springer
16 years 28 days ago
Optimizing exact genetic linkage computations
Genetic linkage analysis is a challenging application which requires Bayesian networks consisting of thousands of vertices. Consequently, computing the likelihood of data, which i...
Dan Geiger, Maáyan Fishelson