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BMCBI
2007
153views more  BMCBI 2007»
14 years 9 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
HPDC
1995
IEEE
15 years 29 days ago
Loop Scheduling for Heterogeneity
In this paper, we study the problem of scheduling parallel loops at compile-time for a heterogeneous network of machines. We consider heterogeneity in three aspects of parallel pr...
Michal Cierniak, Wei Li, Mohammed Javeed Zaki
BIOSYSTEMS
2008
130views more  BIOSYSTEMS 2008»
14 years 9 months ago
Biological networks in metabolic P systems
The metabolic P algorithm is a procedure which determines, in a biochemically realistic way, the evolution of P systems representing biological phenomena. A new formulation of thi...
Vincenzo Manca, Luca Bianco
NAR
2011
191views Computer Vision» more  NAR 2011»
14 years 8 days ago
ConsensusPathDB: toward a more complete picture of cell biology
ConsensusPathDB is a meta-database that integrates different types of functional interactions from heterogeneous interaction data resources. Physical protein interactions, metabol...
Atanas Kamburov, Konstantin Pentchev, Hanna Galick...
CIBCB
2009
IEEE
14 years 7 months ago
An automatic gene ontology software tool for bicluster and cluster comparisons
We propose an Automatic Gene Ontology (AGO) software as a flexible, open-source Matlab software tool that allows the user to easily compare the results of the bicluster and cluster...
Fadhl M. Al-Akwaa, Yasser M. Kadah