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ECCV
2006
Springer
15 years 12 months ago
Aligning Sequences and Actions by Maximizing Space-Time Correlations
Abstract. We introduced an algorithm for sequence alignment, based on maximizing local space-time correlations. Our algorithm aligns sequences of the same action performed at diffe...
Yaron Ukrainitz, Michal Irani
ICPADS
2005
IEEE
15 years 3 months ago
Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors
New biological experimental techniques are continuing to generate large amounts of data using DNA, RNA, human genome and protein sequences. The quantity and quality of data from t...
Xiandong Meng, Vipin Chaudhary
CSL
2005
Springer
15 years 3 months ago
Feasible Proofs of Matrix Properties with Csanky's Algorithm
We show that Csanky’s fast parallel algorithm for computing the characteristic polynomial of a matrix can be formalized in the logical theory LAP, and can be proved correct in LA...
Michael Soltys
GECCO
2003
Springer
103views Optimization» more  GECCO 2003»
15 years 3 months ago
Are Multiple Runs of Genetic Algorithms Better than One?
Abstract. There are conflicting reports over whether multiple independent runs of genetic algorithms (GAs) with small populations can reach solutions of higher quality or can fin...
Erick Cantú-Paz, David E. Goldberg
ISMB
1996
14 years 11 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal