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METMBS
2004
162views Mathematics» more  METMBS 2004»
14 years 11 months ago
A Comparison of DNA Fragment Assembly Algorithms
As more research centers embark on sequencing new genomes, the problem of DNA fragment assembly for shotgun sequencing is growing in importance and complexity. Accurate and fast a...
Lishan Li, Sami Khuri
IJCBDD
2008
141views more  IJCBDD 2008»
14 years 10 months ago
CLUSS2: an alignment-independent algorithm for clustering protein families with multiple biological functions
: CLUSS is an algorithm proposed for clustering both alignable and non-alignable protein sequences. However, CLUSS tends to be ineffective on protein datasets that include a large ...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski
102
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BMCBI
2010
121views more  BMCBI 2010»
14 years 7 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
ISCIS
2003
Springer
15 years 3 months ago
A Video Watermarking Algorithm Based on the Human Visual System Properties
Abstract. In this paper, we propose a new video watermarking algorithm based on the human visual system (HVS) properties to find effective locations in video sequences for robust ...
Ji-Young Moon, Yo-Sung Ho
CJ
2008
90views more  CJ 2008»
14 years 10 months ago
Parameterized Complexity and Biopolymer Sequence Comparison
The article surveys parameterized algorithms and complexities for computational tasks on biopolymer sequences, including the problems of longest common subsequence, shortest commo...
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A....