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CEC
2007
IEEE
15 years 8 months ago
An evolutionary progressive multiple sequence alignment
Abstract This paper presents a new evolutionary method, namely, a Two Phase evolutionary algorithm for multiple sequence alignments. This method is composed of different types of e...
Farhana Naznin, Morikazu Nakamura, Takeo Okazaki, ...
CP
2008
Springer
15 years 4 months ago
Flow-Based Propagators for the SEQUENCE and Related Global Constraints
We propose new filtering algorithms for the SEQUENCE constraint and some extensions of the SEQUENCE constraint based on network flows. We enforce domain consistency on the SEQUENCE...
Michael J. Maher, Nina Narodytska, Claude-Guy Quim...
140
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WWW
2008
ACM
16 years 3 months ago
Efficient mining of frequent sequence generators
Sequential pattern mining has raised great interest in data mining research field in recent years. However, to our best knowledge, no existing work studies the problem of frequent...
Chuancong Gao, Jianyong Wang, Yukai He, Lizhu Zhou
IPPS
2006
IEEE
15 years 8 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
IPPS
2003
IEEE
15 years 7 months ago
Using Hybrid Alignment for Iterative Sequence Database Searches
Progressive sequence model refinement by means of iterative searches is an effective technique for high sensitivity database searches and is currently employed in popular tools s...
Yuheng Li, Mario Lauria, Ralf Bundschuh