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IPPS
2005
IEEE
15 years 8 months ago
High-Performance Direct Pairwise Comparison of Large Genomic Sequences
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
Christopher Mueller, Mehmet M. Dalkilic, Andrew Lu...
INTEGRATION
2007
90views more  INTEGRATION 2007»
15 years 2 months ago
Partitioning-based decoupling capacitor budgeting via sequence of linear programming
In this paper, we propose an efficient algorithm to reduce the voltage noises for on-chip power/ground (P/G) networks of VLSI. The new method is based on the sequence of linear p...
Jeffrey Fan, Sheldon X.-D. Tan, Yici Cai, Xianlong...
BMCBI
2007
175views more  BMCBI 2007»
15 years 2 months ago
CLUSS: Clustering of protein sequences based on a new similarity measure
Background: The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important. The challenge is to identify subfamilies...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski...
IWANN
2009
Springer
15 years 9 months ago
Efficient Exact Pattern-Matching in Proteomic Sequences
Abstract. This paper proposes a novel algorithm for complete exact patternmatching focusing the specificities of protein sequences (alphabet of 20 symbols) but, also highly efficie...
Sérgio A. D. Deusdado, Paulo M. M. Carvalho
GD
2004
Springer
15 years 7 months ago
Dynamic Graph Drawing of Sequences of Orthogonal and Hierarchical Graphs
Abstract. In this paper we introduce two novel algorithms for drawing sequences of orthogonal and hierarchical graphs while preserving the mental map. Both algorithms can be parame...
Carsten Görg, Peter Birke, Mathias Pohl, Step...