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BMCBI
2005
134views more  BMCBI 2005»
15 years 6 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001
FSTTCS
2003
Springer
15 years 11 months ago
Comparing Sequences with Segment Rearrangements
Computational genomics involves comparing sequences based on “similarity” for detecting evolutionary and functional relationships. Until very recently, available portions of th...
Funda Ergün, S. Muthukrishnan, Süleyman ...
IS
2008
15 years 6 months ago
Efficient mining of frequent episodes from complex sequences
Discovering patterns with highly significance is an important problem in data mining discipline. An episode is defined to be a partially ordered set of events for a consecutive an...
Kuo-Yu Huang, Chia-Hui Chang
BMCBI
2006
137views more  BMCBI 2006»
15 years 6 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
WPES
2003
ACM
15 years 11 months ago
Secure and private sequence comparisons
We give an efficient protocol for sequence comparisons of the edit-distance kind, such that neither party reveals anything about their private sequence to the other party (other t...
Mikhail J. Atallah, Florian Kerschbaum, Wenliang D...