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BMCBI
2010
152views more  BMCBI 2010»
15 years 6 months ago
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
Background: High-resolution tandem mass spectra can now be readily acquired with hybrid instruments, such as LTQ-Orbitrap and LTQ-FT, in high-throughput shotgun proteomics workflo...
Chongle Pan, Byung-Hoon Park, William H. McDonald,...
FEGC
2009
86views Biometrics» more  FEGC 2009»
15 years 4 months ago
Binary Sequences and Association Graphs for Fast Detection of Sequential Patterns
We develop an efficient algorithm for detecting frequent patterns that occur in sequence databases under certain constraints. By combining the use of bit vector representations of ...
Selim Mimaroglu, Dan A. Simovici
DCC
2004
IEEE
16 years 6 months ago
Periodicity and Correlation Properties of d-FCSR Sequences
A d-feedback-with-carry shift register (d-FCSR) is a finite state machine, similar to a linear feedback shift register, in which a small amount of memory and a delay (by d-clock c...
Mark Goresky, Andrew Klapper
GCB
2006
Springer
119views Biometrics» more  GCB 2006»
15 years 10 months ago
Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs
: The analysis of small circular sequences requires specialized tools. While the differences between linear and circular sequences can be neglected in the case of long molecules su...
Axel Mosig, Ivo L. Hofacker, Peter F. Stadler
JCB
2008
122views more  JCB 2008»
15 years 6 months ago
Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences
In this article, we propose a new method for computing rare maximal exact matches between multiple sequences. A rare match between k sequences S1; : : :; Sk is a string that occur...
Enno Ohlebusch, Stefan Kurtz