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ICIP
2009
IEEE
16 years 7 months ago
Bim: Image Matching Using Biological Gene Sequence Alignment
Matching two images with similar contents is one of the most fundamental tasks in image processing. Due to its importance, in recent years, many novel techniques have been propose...
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
16 years 2 days ago
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
Yuheng Li, Mario Lauria, Ralf Bundschuh
ISAAC
2004
Springer
114views Algorithms» more  ISAAC 2004»
15 years 11 months ago
Structural Alignment of Two RNA Sequences with Lagrangian Relaxation
RNA is generally a single-stranded molecule where the bases form hydrogen bonds within the same molecule leading to structure formation. In comparing different homologous RNA mole...
Markus Bauer, Gunnar W. Klau
HPDC
2010
IEEE
15 years 7 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BMCBI
2007
105views more  BMCBI 2007»
15 years 6 months ago
Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences
Background: The secondary structure of an RNA must be known before the relationship between its structure and function can be determined. One way to predict the secondary structur...
Stefan Engelen, Fariza Tahi