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SIGMOD
2008
ACM
96views Database» more  SIGMOD 2008»
16 years 6 months ago
OLAP on sequence data
Many kinds of real-life data exhibit logical ordering among their data items and are thus sequential in nature. However, traditional online analytical processing (OLAP) systems an...
Eric Lo, Ben Kao, Wai-Shing Ho, Sau Dan Lee, Chun ...
BIOCOMP
2007
15 years 8 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
CPM
2006
Springer
112views Combinatorics» more  CPM 2006»
15 years 10 months ago
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
BMCBI
2010
147views more  BMCBI 2010»
15 years 6 months ago
Automatic detection of anchor points for multiple sequence alignment
Background: Determining beforehand specific positions to align (anchor points) has proved valuable for the accuracy of automated multiple sequence alignment (MSA) software. This f...
Florian Pitschi, Claudine Devauchelle, Eduardo Cor...
BMCBI
2010
116views more  BMCBI 2010»
15 years 6 months ago
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
Background: High throughput sequencing has become an increasingly important tool for biological research. However, the existing software systems for managing and processing these ...
David B. Burdick, Christopher C. Cavnor, Jeremy Ha...