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CIS
2004
Springer
15 years 3 months ago
Algorithms for Loosely Constrained Multiple Sequence Alignment
For finding accurate and biologically meaningful multiple sequence alignment, it is required to consider a loosely constrained version of multiple sequence alignment. This paper is...
Bin Song, Fengfeng Zhou, Guoliang Chen
DCC
2007
IEEE
15 years 9 months ago
A Simple Statistical Algorithm for Biological Sequence Compression
This paper introduces a novel algorithm for biological sequence compression that makes use of both statistical properties and repetition within sequences. A panel of experts is ma...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison, Chris ...
BMCBI
2004
88views more  BMCBI 2004»
14 years 9 months ago
PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences
Background: This paper addresses the problem of discovering transcription factor binding sites in heterogeneous sequence data, which includes regulatory sequences of one or more g...
Saurabh Sinha, Mathieu Blanchette, Martin Tompa
EDBT
2006
ACM
136views Database» more  EDBT 2006»
15 years 9 months ago
Optimizing Monitoring Queries over Distributed Data
Scientific data in the life sciences is distributed over various independent multi-format databases and is constantly expanding. We discuss a scenario where a life science research...
Frank Neven, Dieter Van de Craen
AAECC
1998
Springer
88views Algorithms» more  AAECC 1998»
14 years 9 months ago
A Generalization of the Massey-Ding Algorithm
The set of all linear recurrence relations satisfied by given sequences of finite length is described by the annihilator ideal of the sequences. The MasseyDing algorithm to compu...
Joachim Althaler, Arne Dür