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BMCBI
2010
163views more  BMCBI 2010»
14 years 4 months ago
RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridiza
Background -: The availability of multiple whole genome sequences has facilitated in silico identification of fixed and polymorphic transposable elements (TE). Whereas polymorphic...
Vipin Singh, Rakesh K. Mishra
SWAT
1994
Springer
117views Algorithms» more  SWAT 1994»
15 years 1 months ago
Improved Approximations of Independent Sets in Bounded-Degree Graphs
Abstract. Finding maximum independent sets in graphs with bounded maximum degree is a well-studied NP-complete problem. We introduce an algorithm schema for improving the approxim...
Magnús M. Halldórsson, Jaikumar Radh...
IPPS
2006
IEEE
15 years 3 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
WOB
2003
140views Bioinformatics» more  WOB 2003»
14 years 11 months ago
Computing Maximum Subsequence in Parallel
The maximum subsequence problem finds the contiguous subsequence of n real numbers with the highest sum. This is an important problem that arises in several contexts in Computatio...
Carlos E. R. Alves, Edson Cáceres, Siang W....
SIAMDM
2000
159views more  SIAMDM 2000»
14 years 9 months ago
Approximating Fractional Multicommodity Flow Independent of the Number of Commodities
Abstract. We describe fully polynomial time approximation schemes for various multicommodity flow problems in graphs with m edges and n vertices. We present the first approximation...
Lisa Fleischer