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BMCBI
2010
143views more  BMCBI 2010»
14 years 7 months ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison
ECML
2007
Springer
14 years 11 months ago
Sequence Labeling with Reinforcement Learning and Ranking Algorithms
Many problems in areas such as Natural Language Processing, Information Retrieval, or Bioinformatic involve the generic task of sequence labeling. In many cases, the aim is to assi...
Francis Maes, Ludovic Denoyer, Patrick Gallinari
NAACL
1994
14 years 11 months ago
Microphone-Independent Robust Signal Processing Using Probabilistic Optimum Filtering
A new mapping algorithm for speech recognition relates the features of simultaneous recordings of clean and noisy speech. The model is a piecewise nonfinear transformation appfied...
Leonardo Neumeyer, Mitch Weintraub
ESA
2011
Springer
269views Algorithms» more  ESA 2011»
13 years 9 months ago
Alphabet-Independent Compressed Text Indexing
Self-indexes can represent a text in asymptotically optimal space under the k-th order entropy model, give access to text substrings, and support indexed pattern searches. Their ti...
Djamal Belazzougui, Gonzalo Navarro
CSB
2004
IEEE
110views Bioinformatics» more  CSB 2004»
15 years 1 months ago
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
Yonghua Han, Bin Ma, Kaizhong Zhang