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GECCO
2006
Springer
159views Optimization» more  GECCO 2006»
15 years 1 months ago
Identification of weak motifs in multiple biological sequences using genetic algorithm
Recognition of motifs in multiple unaligned sequences provides an insight into protein structure and function. The task of discovering these motifs is very challenging because mos...
Topon Kumar Paul, Hitoshi Iba
GECCO
2005
Springer
154views Optimization» more  GECCO 2005»
15 years 3 months ago
Genetic algorithms using low-discrepancy sequences
The random number generator is one of the important components of evolutionary algorithms (EAs). Therefore, when we try to solve function optimization problems using EAs, we must ...
Shuhei Kimura, Koki Matsumura
GECCO
2008
Springer
165views Optimization» more  GECCO 2008»
14 years 11 months ago
Multiple sequence alignment using a GLOCSA guided genetic algorithm
This paper introduces GLOCSA as a new scoring function to rate multiple sequence alignments. It is intended to be simple, considering the whole alignment at once and reflecting t...
Edgar David Arenas-Díaz, Helga Ochoterena-B...
JCB
2000
105views more  JCB 2000»
14 years 9 months ago
A Greedy Algorithm for Aligning DNA Sequences
For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic progra...
Zheng Zhang 0004, Scott Schwartz, Lukas Wagner, We...
BMCBI
2005
90views more  BMCBI 2005»
14 years 9 months ago
An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reaction
Background: Determination and quantification of nucleic acid components in a mixture is usually accomplished by microarray approaches, where the mixtures are hybridized against sp...
Alexander E. Pozhitkov, Kathryn Stemshorn, Diethar...