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BMCBI
2010
132views more  BMCBI 2010»
14 years 10 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
CORR
2008
Springer
128views Education» more  CORR 2008»
14 years 10 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov
GECCO
2005
Springer
112views Optimization» more  GECCO 2005»
15 years 3 months ago
A multiple objective evolutionary algorithm for multiple sequence alignment
The problem of multiple sequence alignment is important for bioinformatics. This problem is widely studied and a popular tool to solve this problem is Clustal X. This work introdu...
Pasut Seeluangsawat, Prabhas Chongstitvatana
SODA
2000
ACM
106views Algorithms» more  SODA 2000»
14 years 11 months ago
Algorithms for optimizing production DNA sequencing
We discuss the problem of optimally "finishing" a partially sequenced, reconstructed DNA segment. At first sight, this appears to be computationally hard. We construct a...
Éva Czabarka, Goran Konjevod, Madhav V. Mar...
GECCO
2007
Springer
160views Optimization» more  GECCO 2007»
15 years 4 months ago
A memetic algorithm for the low autocorrelation binary sequence problem
Finding binary sequences with low autocorrelation is a very hard problem with many practical applications. In this paper we analyze several metaheuristic approaches to tackle the ...
José E. Gallardo, Carlos Cotta, Antonio J. ...