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CIAC
2010
Springer
194views Algorithms» more  CIAC 2010»
15 years 2 months ago
An Algorithmic Framework for Motif Discovery Problems in Weighted Sequences
A weighted sequence is a string in which a set of characters may appear at each position with respective probabilities of occurrence. A common task is to locate a given motif in a ...
Hui Zhang, Qing Guo, Costas S. Iliopoulos
BMCBI
2007
190views more  BMCBI 2007»
14 years 10 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
CORR
2011
Springer
192views Education» more  CORR 2011»
14 years 4 months ago
Distribution-Independent Evolvability of Linear Threshold Functions
Valiant’s (2007) model of evolvability models the evolutionary process of acquiring useful functionality as a restricted form of learning from random examples. Linear threshold ...
Vitaly Feldman
BMCBI
2008
115views more  BMCBI 2008»
14 years 10 months ago
PARPST: a PARallel algorithm to find peptide sequence tags
Background: Protein identification is one of the most challenging problems in proteomics. Tandem mass spectrometry provides an important tool to handle the protein identification ...
Sara Brunetti, Elena Lodi, Elisa Mori, Maria Stell...
BIOSYSTEMS
2008
129views more  BIOSYSTEMS 2008»
14 years 10 months ago
Reconstruction of DNA sequences using genetic algorithms and cellular automata: Towards mutation prediction?
Change of DNA sequence that fuels evolution is, to a certain extent, a deterministic process because mutagenesis does not occur in an absolutely random manner. So far, it has not ...
Ch. Mizas, Georgios Ch. Sirakoulis, Vasilios A. Ma...