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» Algorithmics in Exponential Time
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137
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IPPS
2010
IEEE
15 years 1 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
119
Voted
IPPS
2010
IEEE
15 years 1 months ago
Solving the advection PDE on the cell broadband engine
In this paper we present the venture of porting two different algorithms for solving the two-dimensional advection PDE on the CBE platform, an in-place and an outof-place one, and ...
Georgios Rokos, Gerassimos Peteinatos, Georgia Kou...
IPPS
2010
IEEE
15 years 1 months ago
Efficient and scalable parallel reconstruction of sibling relationships from genetic data in wild populations
Wild populations of organism are often difficult to study in their natural settings. Often, it is possible to infer mating information about these species by genotyping the offspri...
Saad I. Sheikh, Ashfaq A. Khokhar, Tanya Y. Berger...
130
Voted
IPPS
2010
IEEE
15 years 1 months ago
Distributed advance network reservation with delay guarantees
New architectures have recently been proposed and deployed to support end-to-end advance reservation of network resources. These architectures rely on the use a centralized schedul...
Niloofar Fazlollahi, David Starobinski
134
Voted
IPPS
2010
IEEE
15 years 1 months ago
Executing task graphs using work-stealing
Abstract--NABBIT is a work-stealing library for execution of task graphs with arbitrary dependencies which is implemented as a library for the multithreaded programming language Ci...
Kunal Agrawal, Charles E. Leiserson, Jim Sukha
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