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» Algorithmics in Exponential Time
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AB
2008
Springer
15 years 4 months ago
An Algorithm for Qualitative Simulation of Gene Regulatory Networks with Steep Sigmoidal Response Functions
A specific class of ODEs has been shown to be adequate to describe the essential features of the complex dynamics of Gene-Regulatory Networks (GRN). But, the effective exploitatio...
Liliana Ironi, Luigi Panzeri, Erik Plahte
CORR
2007
Springer
106views Education» more  CORR 2007»
14 years 9 months ago
Bandit Algorithms for Tree Search
Bandit based methods for tree search have recently gained popularity when applied to huge trees, e.g. in the game of go [6]. Their efficient exploration of the tree enables to ret...
Pierre-Arnaud Coquelin, Rémi Munos
RECOMB
2006
Springer
15 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
HPDC
2005
IEEE
15 years 3 months ago
Genetic algorithm based automatic data partitioning scheme for HPF
good data partitioning scheme is the need of the time. However it is very diflcult to arrive at a good solution as the number of possible dutupartitionsfor a given real lifeprogra...
Sunil Kumar Anand, Y. N. Srikant
GECCO
2003
Springer
15 years 3 months ago
A Kernighan-Lin Local Improvement Heuristic That Solves Some Hard Problems in Genetic Algorithms
We present a Kernighan-Lin style local improvement heuristic for genetic algorithms. We analyze the run-time cost of the heuristic. We demonstrate through experiments that the heur...
William A. Greene