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BMCBI
2007
113views more  BMCBI 2007»
15 years 3 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar
BMCBI
2007
148views more  BMCBI 2007»
15 years 3 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
BMCBI
2007
135views more  BMCBI 2007»
15 years 3 months ago
Automatic extraction of reliable regions from multiple sequence alignments
Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
Timo Lassmann, Erik L. L. Sonnhammer
JIB
2008
76views more  JIB 2008»
15 years 3 months ago
WebStruct and VisualStruct: web interfaces and visualization for Structure software implemented in a cluster environment
Structure, is a widely used software tool to investigate population genetic structure with multi-locus genotyping data. The software uses an iterative algorithm to group individua...
B. Jayashree, S. Rajgopal, David A. Hoisington, V....
DAM
2007
107views more  DAM 2007»
15 years 3 months ago
Eliminating graphs by means of parallel knock-out schemes
In 1997 Lampert and Slater introduced parallel knock-out schemes, an iterative process on graphs that goes through several rounds. In each round of this process, every vertex elim...
Hajo Broersma, Fedor V. Fomin, Rastislav Kralovic,...
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