Abstract. We study the Arc-Preserving Subsequence (APS) problem with unlimited annotations. Given two arc-annotated sequences P and T, this problem asks if it is possible to delete...
We give two optimal linear-time algorithms for computing the Longest Previous Factor (LPF) array corresponding to a string w. For any position i in w, LPF[i] gives the length of th...
In this paper we look at combining and compressing a set of workflows, such that computation can be minimized. In this context, we look at two novel theoretical problems with appl...
Dhrubajyoti Saha, Abhishek Samanta, Smruti R. Sara...
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
The paper presents a Grid Service allowing to detect and extract the longest common sub-spectrum among a set of mass spectrometry spectra data. The service is based on a novel pat...