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» Algorithms for Finding Gene Clusters
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APIN
2006
168views more  APIN 2006»
15 years 3 months ago
Utilizing Genetic Algorithms to Optimize Membership Functions for Fuzzy Weighted Association Rules Mining
It is not an easy task to know a priori the most appropriate fuzzy sets that cover the domains of quantitative attributes for fuzzy association rules mining. In general, it is unre...
Mehmet Kaya, Reda Alhajj
110
Voted
BMCBI
2008
116views more  BMCBI 2008»
15 years 3 months ago
Algorithm of OMA for large-scale orthology inference
Since the publication of our article (Roth, Gonnet, and Dessimoz: BMC Bioinformatics 2008 9: 518), we have noticed several errors, which we correct in the following. Correction We...
Alexander C. J. Roth, Gaston H. Gonnet, Christophe...
SC
2003
ACM
15 years 8 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
114
Voted
BMCBI
2007
97views more  BMCBI 2007»
15 years 3 months ago
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets
Background: Array comparative genome hybridization (aCGH) provides information about genomic aberrations. Alterations in the DNA copy number may cause the cell to malfunction, lea...
Carmen Lai, Hugo M. Horlings, Marc J. van de Vijve...
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 8 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader