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» Algorithms for Finding Gene Clusters
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KDD
2005
ACM
137views Data Mining» more  KDD 2005»
16 years 3 months ago
Pattern-based similarity search for microarray data
One fundamental task in near-neighbor search as well as other similarity matching efforts is to find a distance function that can efficiently quantify the similarity between two o...
Haixun Wang, Jian Pei, Philip S. Yu
BCB
2010
161views Bioinformatics» more  BCB 2010»
14 years 10 months ago
Genome-wide compatible SNP intervals and their properties
Recent studies suggest that the mammalian genomes can be subdivided in segments within which there is limited haplotype diversity. Understanding the distribution and structure of ...
Jeremy W. Wang, Kyle J. Moore, Qi Zhang, Fernando ...
ICMLA
2008
15 years 4 months ago
Ensemble Machine Methods for DNA Binding
We introduce three ensemble machine learning methods for analysis of biological DNA binding by transcription factors (TFs). The goal is to identify both TF target genes and their ...
Yue Fan, Mark A. Kon, Charles DeLisi
SIAMSC
2008
182views more  SIAMSC 2008»
15 years 3 months ago
A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
Pratik Biswas, Kim-Chuan Toh, Yinyu Ye
177
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ISPDC
2008
IEEE
15 years 9 months ago
Performance Analysis of Grid DAG Scheduling Algorithms using MONARC Simulation Tool
This paper presents a new approach for analyzing the performance of grid scheduling algorithms for tasks with dependencies. Finding the optimal procedures for DAG scheduling in Gr...
Florin Pop, Ciprian Dobre, Valentin Cristea