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» Algorithms for Finding Gene Clusters
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DEXA
2010
Springer
156views Database» more  DEXA 2010»
15 years 4 months ago
Improving Alternative Text Clustering Quality in the Avoiding Bias Task with Spectral and Flat Partition Algorithms
Abstract. The problems of finding alternative clusterings and avoiding bias have gained popularity over the last years. In this paper we put the focus on the quality of these alter...
M. Eduardo Ares, Javier Parapar, Alvaro Barreiro
BMCBI
2007
168views more  BMCBI 2007»
15 years 3 months ago
GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products
Background: With the increased availability of high throughput data, such as DNA microarray data, researchers are capable of producing large amounts of biological data. During the...
Holger Fröhlich, Nora Speer, Annemarie Poustk...
BMCBI
2008
114views more  BMCBI 2008»
15 years 3 months ago
Partial mixture model for tight clustering of gene expression time-course
Background: Tight clustering arose recently from a desire to obtain tighter and potentially more informative clusters in gene expression studies. Scattered genes with relatively l...
Yinyin Yuan, Chang-Tsun Li, Roland Wilson
BMCBI
2005
87views more  BMCBI 2005»
15 years 3 months ago
Efficient decoding algorithms for generalized hidden Markov model gene finders
Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
William H. Majoros, Mihaela Pertea, Arthur L. Delc...
BMCBI
2008
187views more  BMCBI 2008»
15 years 3 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...