We propose a novel semi-supervised clustering method for the task of gene regulatory module discovery. The technique uses data on dna binding as prior knowledge to guide the proces...
Many systems in sciences, engineering and nature can be modeled as networks. Examples are internet, metabolic networks and social networks. Network clustering algorithms aimed to ...
Nurcan Yuruk, Mutlu Mete, Xiaowei Xu, Thomas A. J....
The goal of any clustering algorithm is to find the optimal clustering solution with the optimal number of clusters. In order to evaluate a clustering solution, a number of validit...
Phylogenetic networks model evolutionary histories in the presence of non-treelike events such as hybrid speciation and horizontal gene transfer. In spite of their widely acknowled...
Background: Recent analyses have suggested that many genes possess multiple transcription start sites (TSSs) that are differentially utilized in different tissues and cell lines. ...