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» Algorithms for Finding Gene Clusters
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145
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BMCBI
2006
103views more  BMCBI 2006»
15 years 3 months ago
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
Background: The identification of chromosomal homology will shed light on such mysteries of genome evolution as DNA duplication, rearrangement and loss. Several approaches have be...
Xiyin Wang, Xiaoli Shi, Zhe Li, Qihui Zhu, Lei Kon...
103
Voted
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
15 years 9 months ago
EigenPhenotypes: Towards an Algorithmic Framework for Phenotype Discovery
Studying the genetic control of molecular, anatomical and/or morphological phenotypes in model organisms is a powerful tool in the functional analysis of a gene. The goal of our r...
Alexander Vaughan, Rahul Singh, Ilmi Yoon, Megumi ...
147
Voted
BMCBI
2011
14 years 10 months ago
Ultra-fast sequence clustering from similarity networks with SiLiX
Background: The number of gene sequences that are available for comparative genomics approaches is increasing extremely quickly. A current challenge is to be able to handle this h...
Vincent Miele, Simon Penel, Laurent Duret
140
Voted
BMCBI
2010
178views more  BMCBI 2010»
15 years 3 months ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader
105
Voted
ICIAP
2007
ACM
16 years 3 months ago
A Method of Clustering Combination Applied to Satellite Image Analysis
An algorithm for combining results of different clusterings is presented in this paper, the objective of which is to find groups of patterns which are common to all clusterings. T...
Ivan O. Kyrgyzov, Henri Maître, Marine Campe...