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BMCBI
2008
211views more  BMCBI 2008»
14 years 12 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
ECCV
2008
Springer
16 years 1 months ago
A Generative Shape Regularization Model for Robust Face Alignment
In this paper, we present a robust face alignment system that is capable of dealing with exaggerating expressions, large occlusions, and a wide variety of image noises. The robustn...
Leon Gu, Takeo Kanade
99
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HPDC
2010
IEEE
15 years 25 days ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
IPPS
2006
IEEE
15 years 5 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
RECOMB
2006
Springer
16 years 1 days ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter