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» Algorithms for phylogenetic footprinting
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WG
2004
Springer
15 years 5 months ago
Computing Bounded-Degree Phylogenetic Roots of Disconnected Graphs
The Phylogenetic kth Root Problem (PRk) is the problem of finding a (phylogenetic) tree T from a given graph G = (V, E) such that (1) T has no degree-2 internal nodes, (2) the ex...
Zhi-Zhong Chen, Tatsuie Tsukiji
84
Voted
CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
15 years 3 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan
112
Voted
BMCBI
2008
111views more  BMCBI 2008»
14 years 11 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
93
Voted
IWCIA
2004
Springer
15 years 5 months ago
Performance Evaluation of Binarizations of Scanned Insect Footprints
The paper compares six conventional binarization methods for the special purpose of subsequent analysis of scanned insect footprints. We introduce a new performance criterion for p...
Young Woon Woo
129
Voted
GECCO
2005
Springer
150views Optimization» more  GECCO 2005»
15 years 5 months ago
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
Evolutionary relationships among species can be represented by a phylogenetic tree and inferred by optimising some measure of fitness, such as the statistical likelihood of the t...
Leon Poladian