We study the subsequence packing problem: given a string T and a collection of strings {Si}, find disjoint subsequences {Ti} of T with maximum total length such that each Ti is a ...
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
In this paper, we explore the discriminating subsequencebased clustering problem. First, several effective optimization techniques are proposed to accelerate the sequence mining p...
Jianyong Wang, Yuzhou Zhang, Lizhu Zhou, George Ka...
We study the problem of, given two sequences x and y over a finite alphabet, finding a repetitionfree longest common subsequence of x and y. We show several algorithmic results, a...
—Sequence analysis is very important in our daily life. Typically, each sequence is associated with an ordered list of elements. For example, in a movie rental application, a cus...
Yu Peng, Raymond Chi-Wing Wong, Liangliang Ye, Phi...