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» Algorithms for subsequence combinatorics
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COMBINATORICS
2000
114views more  COMBINATORICS 2000»
14 years 11 months ago
Trees and Matchings
In this article, Temperley's bijection between spanning trees of the square grid on the one hand, and perfect matchings (also known as dimer coverings) of the square grid on ...
Richard Kenyon, James Gary Propp, David Bruce Wils...
SPIRE
2010
Springer
14 years 10 months ago
Restricted LCS
The Longest Common Subsequence (LCS) of two or more strings is a fundamental well-studied problem which has a wide range of applications throughout computational sciences. When the...
Zvi Gotthilf, Danny Hermelin, Gad M. Landau, Moshe...
CPM
2009
Springer
131views Combinatorics» more  CPM 2009»
15 years 3 months ago
Linear Time Suffix Array Construction Using D-Critical Substrings
In this paper we present in detail a new efficient linear time and space suffix array construction algorithm(SACA), called the D-CriticalSubstring algorithm. The algorithm is built...
Ge Nong, Sen Zhang, Wai Hong Chan
SPIRE
2001
Springer
15 years 4 months ago
Speeding-up Hirschberg and Hunt-Szymanski LCS Algorithms
Two algorithms are presented that solve the problem of recovering the longest common subsequence of two strings. The £rst algorithm is an improvement of Hirschberg’s divide-andc...
Maxime Crochemore, Costas S. Iliopoulos, Yoan J. P...
BIOINFORMATICS
2000
99views more  BIOINFORMATICS 2000»
14 years 11 months ago
GeneRAGE: a robust algorithm for sequence clustering and domain detection
Motivation: Efficient, accurate and automatic clustering of large protein sequence datasets, such as complete proteomes, into families, according to sequence similarity. Detection...
Anton J. Enright, Christos A. Ouzounis