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» Algorithms for subsequence combinatorics
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COCOON
2009
Springer
15 years 9 months ago
Convex Recoloring Revisited: Complexity and Exact Algorithms
We take a new look at the convex path recoloring (CPR), convex tree recoloring (CTR), and convex leaf recoloring (CLR) problems through the eyes of the independent set problem. Th...
Iyad A. Kanj, Dieter Kratsch
CPM
2000
Springer
160views Combinatorics» more  CPM 2000»
15 years 7 months ago
Approximation Algorithms for Hamming Clustering Problems
We study Hamming versions of two classical clustering problems. The Hamming radius p-clustering problem (HRC) for a set S of k binary strings, each of length n, is to find p bina...
Leszek Gasieniec, Jesper Jansson, Andrzej Lingas
CIBCB
2007
IEEE
15 years 9 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
COCOON
2006
Springer
15 years 6 months ago
On Dynamic Bin Packing: An Improved Lower Bound and Resource Augmentation Analysis
We study the dynamic bin packing problem introduced by Coffman, Garey and Johnson. This problem is a generalization of the bin packing problem in which items may arrive and depart...
Wun-Tat Chan, Prudence W. H. Wong, Fencol C. C. Yu...
COCOON
2006
Springer
15 years 6 months ago
Finding Patterns with Variable Length Gaps or Don't Cares
In this paper we have presented new algorithms to handle the pattern matching problem where the pattern can contain variable length gaps. Given a pattern P with variable length gap...
M. Sohel Rahman, Costas S. Iliopoulos, Inbok Lee, ...