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» Algorithms for subsequence combinatorics
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COCOON
2008
Springer
15 years 4 months ago
Quasi-bicliques: Complexity and Binding Pairs
Abstract. Protein-protein interactions (PPIs) are one of the most important mechanisms in cellular processes. To model protein interaction sites, recent studies have suggested to f...
Xiaowen Liu, Jinyan Li, Lusheng Wang
CPM
2008
Springer
112views Combinatorics» more  CPM 2008»
15 years 4 months ago
Computing Inverse ST in Linear Complexity
The Sort Transform (ST) can significantly speed up the block sorting phase of the Burrows-Wheeler transform (BWT) by sorting only limited order contexts. However, the best result o...
Ge Nong, Sen Zhang, Wai Hong Chan
COCOON
2011
Springer
14 years 2 months ago
Finding Paths with Minimum Shared Edges
Motivated by a security problem in geographic information systems, we study the following graph theoretical problem: given a graph G, two special nodes s and t in G, and a number k...
Masoud T. Omran, Jörg-Rüdiger Sack, Hami...
CP
2006
Springer
15 years 6 months ago
Revisiting the Sequence Constraint
Many combinatorial problems, such as car sequencing and rostering, feature sequence constraints, restricting the number of occurrences of certain values in every subsequence of a g...
Willem Jan van Hoeve, Gilles Pesant, Louis-Martin ...
STOC
2003
ACM
109views Algorithms» more  STOC 2003»
16 years 3 months ago
Generating random regular graphs
Random regular graphs play a central role in combinatorics and theoretical computer science. In this paper, we analyze a simple algorithm introduced by Steger and Wormald [10] and...
Jeong Han Kim, Van H. Vu