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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
16 years 1 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
IADIS
2008
15 years 8 months ago
Sisa: Seeded Iterative Signature Algorithm for Biclustering Gene Expression Data
One approach to reduce the complexity of the task in the analysis of large scale genome-wide expression is to group the genes showing similar expression patterns into what are cal...
Neelima Gupta, Seema Aggarwal
BMCBI
2010
99views more  BMCBI 2010»
15 years 6 months ago
Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
Background: Alternative splicing is an important mechanism that increases protein diversity and functionality in higher eukaryotes. Affymetrix exon arrays are a commercialized pla...
Yi Qu, Fei He, Yuchen Chen
KAIS
2008
150views more  KAIS 2008»
15 years 6 months ago
A survey on algorithms for mining frequent itemsets over data streams
The increasing prominence of data streams arising in a wide range of advanced applications such as fraud detection and trend learning has led to the study of online mining of freq...
James Cheng, Yiping Ke, Wilfred Ng
TIP
2010
161views more  TIP 2010»
15 years 1 months ago
Automatic Parameter Selection for Denoising Algorithms Using a No-Reference Measure of Image Content
Across the field of inverse problems in image and video processing, nearly all algorithms have various parameters which need to be set in order to yield good results. In practice, ...
Xiang Zhu, Peyman Milanfar